{
  "_id": "6acb72b6fe5cc25786e90373",
  "Package": "TBEST",
  "Type": "Package",
  "Title": "Tree Branches Evaluated Statistically for Tightness",
  "Version": "5.2",
  "Date": "2022-05-24",
  "Author": "Guoli Sun, Alex Krasnitz",
  "Maintainer": "Guoli Sun <guolisun87@gmail.com>",
  "Description": "Our method introduces mathematically well-defined measures\nfor tightness of branches in a hierarchical tree. Statistical\nsignificance of the findings is determined, for all branches of\nthe tree, by performing permutation tests, optionally with\ngeneralized Pareto p-value estimation.",
  "License": "GPL-2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-11 11:25:03 UTC",
    "User": "root"
  },
  "Repository": "https://gsun2018.r-universe.dev",
  "Date/Publication": "2022-05-24 19:10:02 UTC",
  "RemoteUrl": "https://github.com/cran/TBEST",
  "RemoteRef": "HEAD",
  "RemoteSha": "448b143890855034151d1b994544bcced36ec4f3",
  "_user": "gsun2018",
  "_type": "src",
  "_file": "TBEST_5.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/6a27344758c06a741fbd6ae4d1a69b469e0d6d7fb9599a7d9f131deb90eaaf1c",
  "_filesize": 233069,
  "_sha256": "6a27344758c06a741fbd6ae4d1a69b469e0d6d7fb9599a7d9f131deb90eaaf1c",
  "_expires": "2027-01-19T11:27:49.000Z",
  "_created": "2026-10-11T11:25:03.000Z",
  "_published": "2026-10-11T11:27:50.840Z",
  "_buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114458381169,
      "time": 94,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11700533404"
    },
    {
      "job": 114458381213,
      "time": 132,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11700059461"
    },
    {
      "job": 114458381114,
      "time": 88,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11699949822"
    },
    {
      "job": 114458381191,
      "time": 112,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11700847730"
    },
    {
      "job": 114457982653,
      "time": 131,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11699899612"
    },
    {
      "job": 114458381178,
      "time": 73,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11700428759"
    },
    {
      "job": 114458381166,
      "time": 70,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11700189205"
    },
    {
      "job": 114458381186,
      "time": 49,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11701096599"
    },
    {
      "job": 114458381168,
      "time": 65,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11700468539"
    }
  ],
  "_upstream": "https://github.com/cran/TBEST",
  "_commit": {
    "id": "448b143890855034151d1b994544bcced36ec4f3",
    "author": "Guoli Sun <guolisun87@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 5.2\n",
    "time": 1653419402
  },
  "_maintainer": {
    "name": "Guoli Sun",
    "email": "guolisun87@gmail.com",
    "login": "gsun2018",
    "description": "",
    "uuid": 36212594
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "signal",
      "role": "Depends"
    },
    {
      "package": "fdrtool",
      "role": "Depends"
    },
    {
      "package": "graphics",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "gsun2018",
      "count": 2,
      "uuid": 36212594
    }
  ],
  "_userbio": {
    "uuid": 36212594,
    "type": "user",
    "name": "gsun2018",
    "followers": 0
  },
  "_downloads": {
    "count": 248,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TBEST"
  },
  "_mentions": 2,
  "_searchresults": 8,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/TBEST.html"
  ],
  "_realowner": "gsun2018",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2013-11-17"
    },
    {
      "version": "1.2",
      "date": "2014-01-17"
    },
    {
      "version": "1.4",
      "date": "2014-02-24"
    },
    {
      "version": "3.0",
      "date": "2014-05-30"
    },
    {
      "version": "5.0",
      "date": "2014-12-29"
    },
    {
      "version": "5.2",
      "date": "2022-05-24"
    }
  ],
  "_exports": [
    "LeafContent",
    "PartitionTree",
    "plot.best",
    "SigTree"
  ],
  "_datasets": [
    {
      "name": "leukemia",
      "title": "Leukemia data",
      "object": "leukemia",
      "file": "leukemia.rda",
      "class": [
        "data.frame"
      ],
      "fields": [],
      "rows": 38,
      "table": true,
      "tojson": true
    },
    {
      "name": "T10",
      "title": "Breast tumor single cells data",
      "object": "T10",
      "file": "T10.rda",
      "class": [
        "data.frame"
      ],
      "fields": [],
      "rows": 101,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "best",
      "title": "An object of class \"best\"",
      "topics": [
        "best"
      ]
    },
    {
      "page": "LeafContent",
      "title": "Find names of leaves belongigng to given branches of a hierarchical tree",
      "topics": [
        "LeafContent"
      ]
    },
    {
      "page": "leukemia",
      "title": "Leukemia data",
      "topics": [
        "leukemia"
      ]
    },
    {
      "page": "partition",
      "title": "An object of class \"partition\"",
      "topics": [
        "partition"
      ]
    },
    {
      "page": "PartitionTree",
      "title": "Find the most detailed partition of a tree into tight branches.",
      "topics": [
        "PartitionTree"
      ]
    },
    {
      "page": "plot.best",
      "title": "Plot a dendrogam of a hierarchical cluster with branches labeled by their numbers and significance estimates of tightness.",
      "topics": [
        "plot",
        "plot.best"
      ]
    },
    {
      "page": "SigTree",
      "title": "Perform statistical analysis of tightness for branches of a hierarchical cluster.",
      "topics": [
        "SigTree"
      ]
    },
    {
      "page": "T10",
      "title": "Breast tumor single cells data",
      "topics": [
        "T10"
      ]
    }
  ],
  "_rundeps": [
    "fdrtool",
    "MASS",
    "signal"
  ],
  "_score": 1.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "tbest",
  "_universes": [
    "gsun2018"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "5.2",
      "date": "2026-10-11T11:26:37.000Z",
      "distro": "resolute",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/22812f3822b6dadd41adc45236a57e55ffd4d00cc9845f8a4574dbc3e0da2e13",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "5.2",
      "date": "2026-10-11T11:27:17.000Z",
      "distro": "resolute",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/bad45bd3e8fb0e55519489f0142c49b5485384dd18271c0f2dfd81ab70e42c8f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "5.2",
      "date": "2026-10-11T11:26:40.000Z",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/e9219ced49a5666999084d087749cf7bbb6739e619775ddd51ae37a81cbfdcf1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "5.2",
      "date": "2026-10-11T11:26:59.000Z",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/9fc8614c4714d3345d115e2a63b77cf3a985ef9bcb86b3750e9a404afd6b1a58",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "5.2",
      "date": "2026-10-11T11:26:30.000Z",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/f87c4d0725af2b6253c2bfcf920db27243a4621ecc7b3912d49e5a65a9a8e2b9",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "5.2",
      "date": "2026-10-11T11:26:07.000Z",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/e2b5e9050f839e0fc62d890e3e8d02d97083c3d9a75dcaf76760f60710721f25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "5.2",
      "date": "2026-10-11T11:25:50.000Z",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/189a8d34998fd0bebfec674221b42b39dbb18fdd6ccb755b6fe47f8c9e25a269",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "5.2",
      "date": "2026-10-11T11:26:04.000Z",
      "commit": "448b143890855034151d1b994544bcced36ec4f3",
      "fileid": "https://r2.ropensci.org/f7bfc7d4243f8391d0d1877b18a38b287856803db52d09a4c86a9ae79dca64df",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gsun2018/actions/runs/38135333983"
    }
  ]
}